PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG332400.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 196aa    MW: 21992.9 Da    PI: 8.6056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG332400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-111211611055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.8NG332400.4.p 121 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 161
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-15108175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-15109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-12120165No hitNo description
PfamPF000103.3E-9121161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNLDNLQNAA TDWCFDHQSE AFASIDNAVT GDKRALLMDE RRKKSKNSNK KPRIIAPVLM  60
TTSSALDDKA NTELINLSSY WCCSSEDDSI GVCEESVVLK ESSSSRGRSR SSKNSQSLYA  120
KKRRERINEK LKTLQQLIPN GTKVDMSTML EEAVQYVKFL QLQIKLLSSD ETWMYAPLAY  180
NHSSIDINLN SSAKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980781.15e-99PREDICTED: transcription factor bHLH139-like
SwissprotQ7XHI91e-38BH084_ARATH; Transcription factor bHLH84
TrEMBLK3ZNR25e-99K3ZNR2_SETIT; Uncharacterized protein
STRINGSi028242m1e-98(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-35bHLH family protein